Nadeem Lab @ Memorial Sloan Kettering Cancer Center (@nadeemlab)
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Top repositories

1

DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Python
160
star
2

CEP

Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]
Python
66
star
3

Physics-ArX

Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]
Python
54
star
4

DoseRTX

Domain knowledge driven 3D radiation dose prediction [PMB'22]
Python
37
star
5

ImPartial

Interactive deep learning whole-cell segmentation and thresholding using partial annotations
Jupyter Notebook
29
star
6

CIR

Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]
Python
27
star
7

SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
Python
21
star
8

coincidencetest

Exact test for significant feature combination
Python
6
star
9

cg-gnn

Create cell graphs from pathology slide data and train a graph neural network to predict patient outcomes for SPT.
Python
4
star