Explore @microgenomics Open Source projects

Microbial Genomics at CBIB (@microgenomics)

microgenomics

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tutorials

In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

pasteTaxID

This script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta

Workshop-PUC

Repositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017

HumanMicrobiomeAnalysis

R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data

plotMyGBK

parseMethods

Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on development), constrains (metaphlan dependent))

MAGnifico

Pipeline for metagenome-associated genome analysis (in development)

Workshop-UTA

Repositorio para el taller de Bioinformática a realizarse en la Universidad de Tarapacá, Arica, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017.