Microbial Genomics at CBIB (@microgenomics)
Guthub

microgenomics

Twitter logo Share LinkedIn logo Share Facebook logo Share
  • Stars
    star
    99
  • Global Org. Rank 58,231 (Top 19 %)
  • Registered about 9 years ago
  • Most used languages
    Shell
         42.9 %
    Python
         28.6 %
    R
         14.3 %
    Perl
         14.3 %
  • Location 🇨🇱 Chile
  • Country Total Rank 193
  • Country Ranking
    Perl
         8
    Python
         34
    Shell
         35
    R
         47

Top repositories

1

tutorials

In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
Python
79
star
2

pasteTaxID

This script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta
Shell
6
star
3

Workshop-PUC

Repositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017
Perl
4
star
4

HumanMicrobiomeAnalysis

R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data
R
3
star
5

plotMyGBK

Python
3
star
6

parseMethods

Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on development), constrains (metaphlan dependent))
Shell
2
star
7

MAGnifico

Pipeline for metagenome-associated genome analysis (in development)
Shell
1
star
8

Workshop-UTA

Repositorio para el taller de Bioinformática a realizarse en la Universidad de Tarapacá, Arica, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017.
1
star