The McKenna lab (@mckennalab)
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mckennalab

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Top repositories

1

FlashFry

FlashFry: The rapid CRISPR target site characterization tool
Scala
63
star
2

Circuitseq

Nanopore Plasmid Sequencing
JavaScript
30
star
3

SingleCellLineage

Updated scripts and pipelines for processing GESTALT data at single-cell resolution
Scala
19
star
4

TreeUtils

A simple Scala tool to handle running the PHILIP MIX parsimony program and generating JSON output trees
Scala
5
star
5

SciMaul

SCIMaul: A read splitter for single-cell experiments
Scala
4
star
6

gene_146

Code and course material for Gene/QBS 146: Foundations of Bioinformatics I
Jupyter Notebook
3
star
7

SAMToFasta

Convert a SAM and reference files into a paired FASTA alignment file
Rust
2
star
8

gene111

Notebooks and code for Dartmouth's GENE111 class
Jupyter Notebook
2
star
9

custom_barcodes

Generation of custom sequencing barcodes
Scala
2
star
10

DupScoop

Remove duplicate segments from small, circular genome assemblies
Rust
1
star
11

mckennalab.github.io

the rendered version of the website
HTML
1
star
12

clique

Read alignment and collapsing for lineage data
Rust
1
star