Mahmood Lab (@mahmoodlab)
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Top repositories

1

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Python
1,039
star
2

HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
Jupyter Notebook
497
star
3

PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI
Jupyter Notebook
269
star
4

UNI

Towards a general-purpose foundation model for computational pathology - Nature Medicine
Jupyter Notebook
251
star
5

CONCH

A vision-language foundation model for computational pathology - Nature Medicine
Python
225
star
6

NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation
Python
183
star
7

PORPOISE

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Jupyter Notebook
179
star
8

TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature
Python
170
star
9

MCAT

Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
Jupyter Notebook
149
star
10

HEST

HEST: Bringing Spatial Transcriptomics and Histopathology together
Python
123
star
11

Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Python
114
star
12

SurvPath

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
Python
96
star
13

SISH

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Python
95
star
14

MI-Zero

Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Python
87
star
15

TriPath

Analysis of 3D pathology samples using weakly supervised AI - Cell
Python
80
star
16

TANGLE

Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
Python
70
star
17

PANTHER

Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Jupyter Notebook
57
star
18

MAPS

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
Jupyter Notebook
46
star
19

HistoFL

Federated Learning for Computational Pathology - Medical Image Analysis
Python
44
star
20

CRANE

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
Python
28
star
21

MMP

Multimodal prototyping for cancer survival prediction - ICML 2024
Jupyter Notebook
27
star
22

MADELEINE

MADELEINE: multi-stain slide representation learning (ECCV'24)
Python
25
star
23

varpool

Variance pooling to incorporate ITH in CPath models - MICCAI 2022
Python
22
star
24

multimodal-cancer-origin-prediction

Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction
Python
15
star
25

CPATH_demographics

Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
Python
12
star
26

MANTA

Multimodal AI for Renal Allograft Biopsy Assessment
Python
4
star
27

hest-website

Jekyll website for HEST-1k
CSS
2
star
28

EmbeddedAI-Scope

A 3D Printed Embedded AI-based Microscope for Pathology Diagnosis
Jupyter Notebook
1
star
29

MAXIM

MArker imputation model for multiple\underlineX IMages
Jupyter Notebook
1
star