Explore @lowe-lab-ucl Open Source projects

CellX // Lowe lab UCL (@lowe-lab-ucl)

lowe-lab-ucl

Stars
121
Global Org. Rank 52,601 (Top 17 %)
Registered almost 4 years ago
Most used languages

Python
66.7 %

Jupyter Notebook
33.3 %
Location 🇬🇧 United Kingdom
Country Total Rank 10,429
Country Ranking

Jupyter Notebook
476

Python
2,106

arboretum

Track and lineage visualization with btrack and Napari 🌲

unet_segmentation_metrics

Metrics for determining segmentation accuracy

Jupyter Notebook

cellx-predict

Explainable AI model of cell behavior

cnn-annotator

Annotate microscopy images for CNN classifier

Jupyter Notebook

trajectoryflow

octopuslite-reader

reader for octopuslite data

napari-btrack

Napari plugin for btrack

segment-classify-track

Full processing piepline for cell tracking

Jupyter Notebook

napari-btrack-reader

Napari plugin to load btrack files

protocols