Looso bioinformatics lab (@loosolab)
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loosolab

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Top repositories

1

TOBIAS

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
Python
188
star
2

UROPA

Universal RObust Peak Annotator
Python
15
star
3

scanpro

Jupyter Notebook
11
star
4

TF-COMB

Transcription Factor Co-Occurrence using Market Basket analysis
Python
10
star
5

i2dash

i2dash: interactive and iterative dashboards.
R
10
star
6

cardiac-progenitors

Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement
R
8
star
7

Datenanalyse-2021

Jupyter Notebook
2
star
8

mirpipe

Source code for the MIRPIPE miRNA detection and quantification pipeline.
Perl
2
star
9

wilson

WIlsON: Webbased Interactive Omics visualizatioN. This is a mirror of
R
2
star
10

denis

framework for de novo motif generation on ATAC-seq
Python
2
star
11

TOBIAS_snakemake

Snakemake pipeline for running TOBIAS analysis
Python
2
star
12

conda-buildkite-plugin

Run commands in conda environments
Shell
1
star
13

i2dash.scrnaseq

Components for an i2dashboard from i2dash, related to data from single-cell RNA-sequencing
R
1
star
14

Li_et_al_2023_heart_regeneration

Inhibition of fatty acid oxidation stimulates KDM5-mediated H3K4me3 demethylation and enables heart regeneration in adult mice
R
1
star