Šikić lab (@lbcb-sci)
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lbcb-sci

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  • Stars
    star
    600
  • Global Org. Rank 21,013 (Top 7 %)
  • Registered over 5 years ago
  • Most used languages
    Python
         58.3 %
    C++
         33.3 %
    Rust
         8.3 %
  • Location πŸ‡ΈπŸ‡¬ Singapore
  • Country Total Rank 411
  • Country Ranking
    C++
         31
    Rust
         39
    Python
         456

Top repositories

1

raven

De novo genome assembler for long uncorrected reads
C++
189
star
2

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
C++
188
star
3

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
Rust
88
star
4

RiNALMo

RiboNucleic Acid (RNA) Language Model
Python
19
star
5

GNNome

A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
Python
18
star
6

rockfish

Python
6
star
7

ram

C++
6
star
8

MetagenomicsBenchmark

Python
5
star
9

I002C

Telomere-to-Telomere diploid Indian Genome
5
star
10

roko

A deep learning consensus polisher
Python
3
star
11

ratlesnake

C++
3
star
12

Rockfish-old

Deep learning based method for detecting DNA base modifications
Python
2
star
13

GNNs-Hamiltonian-cycles

Supplementary code for "Finding Hamiltonian cycles with graph neural networks"
Python
1
star