Structural Bioinformatics Laboratory (@labstructbioinf)
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labstructbioinf

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Top repositories

1

localpdb

Python package to manage protein structures and their annotations
Python
39
star
2

pLM-BLAST

Detection of remote homology by comparison of protein language model representations
Python
34
star
3

DeepCoil

Fast and accurate prediction of coiled coil domains in protein sequences. ​
Python
19
star
4

EdgeGat

graph neural network layer for Deep Graph Library with pytorch backend
Python
13
star
5

rossmann-toolbox

Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins
Python
10
star
6

PiPred

Deep learning based prediction of pi-helices in protein sequences
Python
10
star
7

lbs-tools

Jupyter Notebook
7
star
8

graph_toolbox

utilities for processing protein structures
Jupyter Notebook
4
star
9

DeepCoil_Paper_2018

Scripts and jupyter notebooks necessary to replicate the analyses presented in the DeepCoil paper 2018.
Jupyter Notebook
3
star
10

samcc_turbo

Software for automatic detection and measurement of coiled coils in PDB structures.
Python
3
star
11

HAMPpred

Assessing the conformational landscape of the HAMP domain with AlphaFold2
Jupyter Notebook
3
star
12

edi

HTML
2
star
13

MDDesign

Set of scripts that facilitate molecular dynamics aided screening of the models generated with Rosetta and selection of the structural ensembles that can be used as input in protein design simulations.
Python
2
star
14

dc2_oligo

Prediction of oligomeric state of coiled-coil domains
Python
1
star