@klarman-cell-observatory
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klarman-cell-observatory

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  • Stars
    star
    320
  • Global Org. Rank 31,142 (Top 10 %)
  • Registered over 6 years ago
  • Most used languages
    Jupyter Notebook
         57.7 %
    R
         19.2 %
    Python
         15.4 %
    WDL     3.8 %
    Java
         3.8 %

Top repositories

1

scPhere

Python
93
star
2

scPlot

Single cell interactive plotting tools
Jupyter Notebook
24
star
3

scSVA

Single-cell Scalable Visualization and Analytics
R
24
star
4

PowerAnalysisForSpatialOmics

Jupyter Notebook
23
star
5

forceatlas2

Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d
Java
20
star
6

hdst

Jupyter Notebook
19
star
7

HTAPP-Pipelines

A record of the analysis pipelines used to create the HTAPP data
Jupyter Notebook
16
star
8

perturbseq

Perturb-seq analysis package
Python
13
star
9

Perturb-CITE-seq

Python
12
star
10

ivPerturbSeq

R
12
star
11

covid19-autopsy

Jupyter Notebook
11
star
12

Riboseq-nuORFs

Jupyter Notebook
10
star
13

sc_eVIP

Variant impact phenotyping using Perturb-seq
Jupyter Notebook
8
star
14

scCloud

scCloud workflows
WDL
5
star
15

sm-omics

Jupyter Notebook
5
star
16

forceatlas2-python

Pip installable forceatlas2
Python
4
star
17

RetinalGanglionCell-ONC

R
4
star
18

human_skin_inflammation

Jupyter Notebook
3
star
19

snFFPE-Seq

analysis for single nucleus FFPE-Sequencing
Jupyter Notebook
3
star
20

ens_atlas

R
2
star
21

scBTF

Single Cell Bayesian Tensor Factorization
Jupyter Notebook
2
star
22

inCITE-seq

Jupyter Notebook
2
star
23

scSVAtools

R
1
star
24

DIALOGUE

1
star
25

scbtf_experiments

Experiments ran with scbtf
Jupyter Notebook
1
star
26

scCloudPy

Jupyter Notebook
1
star
27

skin-ILCs

Jupyter Notebook
1
star