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InterMine (@intermine)

intermine

Stars
606
Global Org. Rank 21,253 (Top 7 %)
Registered almost 15 years ago
Most used languages

JavaScript
35.1 %

Java
17.6 %

Python
10.8 %

Clojure
6.8 %

HTML
5.4 %

CoffeeScript
5.4 %

CSS
4.1 %

R
2.7 %

Shell
2.7 %

Jupyter Notebook
2.7 %

Perl
2.7 %

Ruby
1.4 %

PostScript 1.4 %

PLpgSQL 1.4 %
Location 🇬🇧 United Kingdom
Country Total Rank 2,388
Country Ranking

PostScript 37

PLpgSQL 59

Clojure
67

CoffeeScript
123

Java
212

R
266

Perl
614

HTML
1,035

Jupyter Notebook
1,164

CSS
1,631

Shell
1,855

JavaScript
1,916

Python
3,854

Ruby
4,126

intermine

A powerful open source data warehouse system

bluegenes

A friendly next-generation interface for Genomic data discovery powered by InterMine

InterMineR

R package for InterMine

intermine-ws-python-docs

Tutorials for the InterMine Python web client

Jupyter Notebook

internships

InterMine GSoC informational mini-site for gsoc mentors and students

CDN

JavaScript, Cascading Style Sheet Content Delivery Network

im-tables

Dynamic Result Table Library

imjs

InterMine Generic WebService Client Library

training-workshops

List of InterMine training workshops and links to repos / materials

intermine-registry

Registry to store and browse all known instances of InterMine. Developed during GSoC 2017 by Leonardo Kuffo

intermine-ws-python

InterMine Client library in Python

training-portal

Portal for training resources for InterMine.

neo4j

Project to develop Neo4j as the backing store for InterMine

outreach

Repo for ideas and community discussions about InterMine-related outreach and communities

generator-bluegenes-tool

Scaffold generator for BlueGenes tools

bluegenes-old

Retired. Visit BlueGenes instead

intermine-homepage-2017

InterMine's new homepage as of 2017

im-docs

Documentation for the InterMine project

im-tables-3

clojurescript library to display and manipulate intermine query results on a webpage

biotestmine

An example InterMine - for demoing and testing

intermine-python-ws-demo

A demo webapp using InterMine web services to query model organism data.

bluegenes-tissue-expression-visualizer

Visualization for BlueGenes of tissue expression

similarity

biovalidator

a library to validate biological data formats

neo4j-benchmark

intermine_compose

Repo to handle docker orchestration in the cloud

docker-intermine-gradle

Docker for InterMine

bluegenes-ux-ideas

Ideas for improvement in ux-ui

MineViewer

A Perl webapp for viewing data in InterMine datawarehouses

intermine-user-docs

Documentation for using an InterMine webapp.

intermine-authorization-server

intermine_boot

A little app to spin up local containers in which to build an InterMine

community-call-archives

Archive of InterMine Community Call agendas and notes

intermine_cloud

repo for cloud infrastructure

imcljs

design-materials

A collection of paper diagrams, presentations, sketches, Photoshop designs and websites for InterMine

RatPortal

A Web-Servicer based version of RGD portal pages

InterMine-Trac-Theme

http://intermine.org

bluegenes-tool-store

BlueGenes' Tool API server. Used as dependency in BlueGenes but can also be used standalone.

bluegenes-tool-homology

intermine-ws-java

Java client for InterMine

cytoscape-intermine

Widget to allow intermine gene interactions to be viewed using cytoscape.js

intermine-steps

InterMine 2.0 Prototype preserving history of Steps

intermine-scripts

All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts

ListBasedQueryBuilder

A query bulder based on navigating from list to list

intermine-ws-java-docs

Examples for using the InterMine Java client

bluegenes-expression-box-swarm-visualizer

intermine_configurator

a group of web services used to create an InterMine instance

camCHILDMine

intermine-report-widgets

A node.js reference implementation of a service for loading and rendering Report Widgets (Displayers).

intermine-bio-sources-old

Data parsers not in use

GMOD-RPC-Adaptor

Adaptor for processing GMOD-RPC calls as InterMine webservice requests

GMOD-RPC-InterMine

InterMine's GMOD-RPC modules

InterMOD-Logo

A logo for the InterMOD project

intermine-ws-bio-ruby

Bio Extensions for the Ruby WS client

imjs-docs

bluegenes-tool-cytoscape

Thin wrapper around the cytoscape-intermine library to present intermine gene & protein interaction networks in bluegenes

wizard

early mockups for intermine data import wizard

flymine-bio-sources

Data sources for FlyMine

intermine-api-loader

Simplify loading of JS and CSS dependencies

TreeSearchAutoComplete

Query Builder Demo with Autocompleting paths

humanmine-sitemap

sitemaps for humanmine

intermine-embedding-examples

InterMine Web Services demos and examples through the use of imjs or widgets.

bluegenes-protein-atlas-tissue-expression-visualizer

identifiers-widget

embeddable js widget to display identifiers.org info on your page

flymine

FlyMine - an InterMine instance with Drosophila data

DojoTreeBrowser

Proof of concept for ajax-based query builder

humanmine-bio-sources

Data sources for HumanMine

bluegenes-mine-config-checker

checks intermines on the registry for bluegenes readyness

bluegenes-go-term-visualizer

iodocs

Fork Of Mashery's IODocs project

open-source-graphics

micklem-lab-site

Micklem Lab site on Blað CMS

cross-repo-contributor-list

interminer-workshop

InterMineR exercises for training workshops

Jupyter Notebook

covidmine

facetted-query-builder

A facetted query builder.

intermine-accordb

Compare HomoloGene, OrthoDB and Panther datasets

steps-ontology-tool

intermine-list-widgets

Client for embedding InterMine widgets (ws_widgets)

intermine-apps-c

InterMine apps built using Bower and Grunt

dagify

Render DAGs in interesting ways