Explore @icgc-argo-workflows Open Source projects

ICGC ARGO Workflows (@icgc-argo-workflows)

icgc-argo-workflows

Stars
36
Global Org. Rank 92,199 (Top 30 %)
Registered almost 4 years ago
Most used languages

Nextflow 46.2 %

Python
23.1 %

Shell
7.7 %

HTML
7.7 %

mupad 7.7 %

VBA 7.7 %
Location 🇨🇦 Canada
Country Total Rank 12,579
Country Ranking

mupad 1

Nextflow 4

VBA 37

Shell
2,736

Python
5,470

HTML
6,858

dna-seq-processing-wfs

ICGC ARGO DNA-Seq Processing Workflow

rna-seq-alignment

RNA-Seq alignment packages

sanger-wgs-variant-calling

ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow

allele-specific-expression

Allele Specific Expression (ASE) analysis package

dnaalnqc

ICGC-ARGO workflow for DNA-Seq alignment QC

dna-seq-processing-tools

A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow

alternative-promoter-analysis

Alternative Promoter Analysis Packages

rna-editing

RNA editing analysis

icgc-argo-mutational-signatures

ICGC ARGO Mutational Signatures Workflow Packages

argo-qc-tools

Collection of ARGO data quality tool packages

variant-calling-tools

A collection of variant calling tools / modules used in ICGC ARGO variant calling workflows

metadata-for-benchmarking-datasets

This repository contains metadata information for PCAWG WGS/RNA-Seq/Validation datasets

argo-analysis-pipelines-overview

Overview of ICGC-ARGO Analysis Pipelines

rna-seq-expression-counting