BIFO (@hzi-bifo)
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hzi-bifo

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  • Stars
    star
    268
  • Global Org. Rank 34,466 (Top 11 %)
  • Registered over 9 years ago
  • Most used languages
    Python
         34.8 %
    R
         26.1 %
    C++
         21.7 %
    Tcl     4.3 %
    Perl
         4.3 %
    C
         4.3 %
    HTML
         4.3 %
  • Location ๐Ÿ‡ฉ๐Ÿ‡ช Germany
  • Country Total Rank 5,494
  • Country Ranking
    Tcl     58
    R
         306
    Perl
         812
    C++
         1,350
    Python
         1,449
    HTML
         4,732
    C
         5,396

Top repositories

1

RiboDetector

Accurate and rapid RiboRNA sequences Detector based on deep learning
Python
95
star
2

Haploflow

C++
26
star
3

epitope-prediction

Python
15
star
4

Quasimodo

QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
C++
13
star
5

Phylogeography_Paper

This repository contains all data and code for the manuscript "Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic".
R
6
star
6

epitope-prediction-paper

Data and results for the EpitopeVec paper
Python
5
star
7

Predicting_PA_AMR_paper

Python
5
star
8

seq2geno2pheno

5
star
9

OligoMM

Scripts to reproduce analysis for Brugiroux et al. manuscript
R
4
star
10

BarleyMeta

scripts to reproduce the analysis and figures from Bulgarelli et al., 2015
R
3
star
11

FrechetTreeDistance

This repository contains all code and data for the manuscript "A Frรฉchet tree distance measure to compare phylogeographic spread paths across trees"
R
3
star
12

AMR_benchmarking

Python
3
star
13

SDplots

This repository contains all published data.
2
star
14

GitHub

2
star
15

seq2geno

Reproducible and comprehensive sequence analyses for single-species bacterial dataset
Tcl
2
star
16

scelestial-paper-materials-devel

The lineage tree reconstruction method based on Steiner tree problem - dataset and test scripts for the paper (development version)
C++
2
star
17

SDplots_VaccineUpdates

Vaccine strain recommendations for human influenza A viruses with the method described in Klingen et al. 2017
2
star
18

covid-germany-mcmc

SARS-CoV-2 lineage importations and spread are reduced after nonpharmaceutical interventions in phylogeographic analyses
HTML
2
star
19

Model-T

Python
1
star
20

CoronaDataVis

Visualization and statistics of SARS-Cov2 data
R
1
star
21

PPSplus

Python
1
star
22

art_illumina_profiles

snakemake pipeline to generate art_illumina profiles from public datasets
Python
1
star
23

AntiPatch

This repository contains all published data.
R
1
star
24

seq2geno-dev

Computational pipeline for genomic features of bacterial population
Perl
1
star
25

mdasim

MDAsim 2: a Multiple Displacement Amplification Simulator (continued development from: https://sourceforge.net/projects/mdasim/)
C
1
star
26

corona_lineage_dynamics

SDPlots scripts for the coverage server
C++
1
star
27

PatchInference

This repository contains the source code to the graph-cut clustering algorithm.
C++
1
star