Hurwitz Lab (@hurwitzlab)
Guthub

hurwitzlab

Twitter logo Share LinkedIn logo Share Facebook logo Share
  • Stars
    star
    49
  • Global Org. Rank 80,443 (Top 26 %)
  • Registered over 10 years ago
  • Most used languages
    Python
         29.6 %
    R
         18.5 %
    Shell
         14.8 %
    Elm
         14.8 %
    JavaScript
         7.4 %
    Perl
         7.4 %
    Makefile     3.7 %
    Web Ontology Language     3.7 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 69,372
  • Country Ranking
    Web Ontology Language     52
    Elm
         130
    Makefile     1,494
    Perl
         2,499
    R
         3,499

Top repositories

1

elm-imicrobe-spa

Elm
10
star
2

docker-mothur

Docker image for running mothur.
Makefile
4
star
3

biosys-analytics

BE434/535 Biosystems Analytics
Python
3
star
4

appetizer

Create the app.json for Stampede
Elm
3
star
5

planet-microbe-functional-annotation

Python
3
star
6

gnu-parallel-yourself

Template script and instructions for using GNU Parallel in place of the TACC Launcher on Stampede2.
Shell
2
star
7

WGCNA-of-Type-II-Diabetic-Skin

WGCNA of Type II Diabetic Skin
R
2
star
8

phage_detection_benchmarks

Code used to benchmark metagenomic phage detection tools.
Python
2
star
9

orminator

Generate SQLAlchemy ORM classes for an existing database.
Python
1
star
10

singularity-phispy

Singularity container for phispy
Shell
1
star
11

bacteria-bowtie

Simple bioinformatics pipeline to align / count RNA reads to a bacterial genome with bowtie2 / cuffnorm and cuffquant
R
1
star
12

imicrobe-lib

General purpose scripts and libraries for iMicrobe.
Perl
1
star
13

centrifuge-filter

Use Centrifuge calls to filter sequence (FASTA) into accepted/rejected
Python
1
star
14

imicrobe-mash-node2vec

Scripts to learn and cluster a vector-space embedding on all-vs-all iMicrobe MASH distance matrix.
Shell
1
star
15

centrifuge

Run Centrifuge on Stampede
Python
1
star
16

planet-microbe-datapackages

Data packages for the Planet Microbe project
R
1
star
17

elm-imicrobe-search

Elm
1
star
18

node-imicrobe

Node app server for iMicrobe data
JavaScript
1
star
19

ivirus-mojo

Mojo for iVirus
JavaScript
1
star
20

biosystems-analytics-2020

434/534 Biosystems Analytics course at the University of Arizona
Python
1
star
21

meowl

Microbial Environments described using OWL (MEOWL)
Web Ontology Language
1
star
22

fizkin

All-vs-all sequence comparison for WGS
R
1
star
23

kmerizer

Working with k-mers
Perl
1
star
24

mash

R
1
star
25

viral-learning

Deep learning demonstration code.
Python
1
star
26

planet-microbe-app

Planet Microbe - Semantic search across β€˜omics, environmental, and physiochemical data layers.
Elm
1
star
27

Host-Screen

Utilizes Bowtie2 to remove host contaminated read from Fasta/q files
Shell
1
star