Ira Hall lab (@hall-lab)
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hall-lab

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  • Stars
    star
    712
  • Global Org. Rank 19,198 (Top 7 %)
  • Registered over 10 years ago
  • Most used languages
    Python
         68.4 %
    WDL     10.5 %
    Shell
         10.5 %
    C
         5.3 %
    C++
         5.3 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 11,976
  • Country Ranking
    WDL     3
    C
         948
    Python
         3,737
    Shell
         7,456

Top repositories

1

speedseq

A flexible framework for rapid genome analysis and interpretation
C
314
star
2

svtools

Tools for processing and analyzing structural variants.
Python
148
star
3

svtyper

Bayesian genotyper for structural variants
Python
126
star
4

sv-pipeline

Pipeline for structural variation detection in cohorts
WDL
48
star
5

gtex

GTEx analysis scripts
Python
20
star
6

competitive-alignment

Shell
10
star
7

long-read-validation

Long-read validation of BEDPE structural variation
Python
9
star
8

assembly_validation

Python
5
star
9

fastqtl

Fork of FastQTL for SVs
C++
5
star
10

1kg_sv_comparison

Python
4
star
11

sv_paper_042020

supplementary data for abel et al paper
4
star
12

extract_sv_reads

Tool for extracting splitter or discordant reads from a BAM or CRAM file.
Python
4
star
13

protocols

Hall lab analysis protocols
Shell
2
star
14

io

i/o tools
Python
2
star
15

cluster_intro

Hall Lab Computing 101
2
star
16

cshl_sv_2016

Python
2
star
17

bamkit

Tools for common BAM file manipulations
Python
2
star
18

cromwell-deployment

Scripts and configuration to setup a Cromwell deployment
Python
2
star
19

tenx-gcp

Run 10X Genomics Software in Google Cloud Deployments
Python
1
star
20

gatk4-germline-snv-pipeline

GATK4 pipeline for joint variant calling (SNP/INDELs)
WDL
1
star
21

lumpy-merge

Python
1
star