Guigo Lab (@guigolab)
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guigolab

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  • Stars
    star
    260
  • Global Org. Rank 35,048 (Top 12 %)
  • Registered over 9 years ago
  • Most used languages
    Python
         27.8 %
    Nextflow     22.2 %
    Perl
         16.7 %
    R
         11.1 %
    Go
         5.6 %
    Vue     5.6 %
    C
         5.6 %
    TypeScript
         5.6 %
  • Location πŸ‡ͺπŸ‡Έ Spain
  • Country Total Rank 1,150
  • Country Ranking
    Nextflow     5
    Perl
         21
    R
         82
    Vue     193
    Go
         274
    Python
         291
    C
         432
    TypeScript
         1,835

Top repositories

1

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples
Python
119
star
2

grape-nf

An automated RNA-seq pipeline using Nextflow
Nextflow
36
star
3

FA-nf

Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
Perl
17
star
4

bamstats

A command line tool to compute mapping statistics from a BAM file
Go
17
star
5

geneidx

Nextflow pipeline for genome annotation of protein-coding genes
Nextflow
16
star
6

chip-nf

An automated ChIP-seq pipeline using Nextfow
Nextflow
16
star
7

LyRic

Long RNA-seq analysis workflow
Python
13
star
8

geneid

Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences
C
13
star
9

tmerge

Merge transcriptome read-to-genome alignments into non-redundant transcript models
Perl
12
star
10

CRISPETA

A really flexible tool to obtain CRISPR paired gRNAs on desired regions of a genome
Python
9
star
11

sQTLseekeR2

R package to detect splicing QTLs (sQTLs)
R
8
star
12

ipsa-nf

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Perl
7
star
13

sqtlseeker2-nf

An automated sQTL mapping pipeline using Nextflow
R
5
star
14

biogenome-portal

Biogenome data portal
Vue
4
star
15

sambamBench-nf

A simple Nextflow pipeline for testing the performance of sambamba vs samtools
Nextflow
3
star
16

DeepFryer

DeepFryer - Deep Learning Framework for Your Expression RNA-seq data
Python
3
star
17

jbrowse-plugin-refget-api

A JBrowse 2 plugin to access servers implementing the refget API of GA4GH
TypeScript
2
star
18

pb_gen

Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files
Python
1
star
19

gencode-cls-master-table

Results of the GENCODE pipeline to produce a collection of full length high quality transcripts
1
star