Grunwald lab (@grunwaldlab)
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grunwaldlab

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  • Stars
    star
    377
  • Global Org. Rank 28,330 (Top 10 %)
  • Registered about 11 years ago
  • Most used languages
    HTML
         45.0 %
    R
         40.0 %
    JavaScript
         10.0 %
    Python
         5.0 %
  • Location 🇺🇸 United States
  • Country Total Rank 19,631
  • Country Ranking
    R
         238
    HTML
         1,531

Top repositories

1

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
R
135
star
2

Population_Genetics_in_R

A primer for computational tools to analyze genetics of populations in R
HTML
84
star
3

poppr

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
R
68
star
4

analysis_of_microbiome_community_data_in_r

This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
HTML
17
star
5

Reproducible-science-in-R

This site provides information on conducting reproducible science using the R language.
HTML
14
star
6

krisp

A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.
Python
10
star
7

effectR

An R package to call oomycete effectors
R
10
star
8

quiltr

R package for making website representations of directories
R
5
star
9

Microbe-ID

Microbe-ID
JavaScript
4
star
10

aps_workshop

2
star
11

audpc_example

An example analysis for calculating AUDPC using RMarkdown
HTML
2
star
12

psminer

Work in progress. Backend for pathogensurveillance
R
2
star
13

supplementary-poppr-2.0

Supplementary materials for Frontiers paper on novel R tools for population genomics
HTML
2
star
14

metacoder_documentation

Documentation for the metacoder R package
HTML
2
star
15

popgen_review_examples

Examples for population genetics review manuscript
HTML
1
star
16

phytophthora_id

Webpage of Phytophthora ID of the Grunwald lab.
JavaScript
1
star
17

ezec

Easy Interface to Effective Concentration Calculations
R
1
star
18

labtools

An R package for lab notebook upkeep
R
1
star
19

Supplements_Knaus_Pinfestans_CNV

Supplements for Knaus et al. manuscript on changes variation in genic copy number in Phytophthora infestans and relatives.
1
star
20

OomyceteDB

A new barcode for characterizing oomycete communities.
HTML
1
star
21

poppr-poster-aps-2016

source data for the APS 2016 poster on Tools for analysis of clonal population genetic data in R
HTML
1
star
22

bioinformatics_practice

Record of exercises done to learn bioinformatics
R
1
star