Genomic Medicine Sweden (@genomic-medicine-sweden)
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genomic-medicine-sweden

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  • Stars
    star
    76
  • Global Org. Rank 65,649 (Top 21 %)
  • Registered over 5 years ago
  • Most used languages
    Python
         41.7 %
    Nextflow     41.7 %
    Groovy
         8.3 %
    HTML
         8.3 %
  • Location πŸ‡ΈπŸ‡ͺ Sweden
  • Country Total Rank 4,178
  • Country Ranking
    Nextflow     2
    Groovy
         30
    HTML
         335
    Python
         1,349

Top repositories

1

nallo

A long-read (PacBio and ONT) analysis pipeline written in Nextflow
Nextflow
16
star
2

tomte

A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
Nextflow
11
star
3

jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Nextflow
9
star
4

pgx

Pharmacogenomics pipeline
HTML
8
star
5

gms_16S

A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
Groovy
5
star
6

Twist_Solid

Pipeline for Solid tumours
Python
3
star
7

Information-specifications

3
star
8

poppy

Python
3
star
9

RareDisease_RNA_workflow

Nextflow
2
star
10

meta-val

nf-core/taxprofiler post-processing; verification of classification results; consensus maps
Nextflow
2
star
11

micro-site-data-sharing

This repo shares data between sites for the development of GMS-micro solutions.
1
star
12

gms_somatic

Placeholder for solid tumor bioinformatic workflow
Python
1
star
13

GMS-uploader

utility for uploading sequence and metadata to the NGP
Python
1
star
14

meta-vis

Visualisation of metagenomic analysis results
Python
1
star
15

Twist_Solid_pipeline_files

Design and filter files used by the pipeline
1
star