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Global Biodiversity Information Facility (@gbif)

gbif

Stars
735
Global Org. Rank 18,436 (Top 6 %)
Registered almost 12 years ago
Most used languages

Java
40.4 %

JavaScript
21.3 %

HTML
14.9 %

R
4.3 %

Python
3.2 %

Dockerfile
2.1 %

PHP
2.1 %

SCSS 2.1 %

Shell
1.1 %

TypeScript
1.1 %

HiveQL 1.1 %

FreeMarker 1.1 %

XSLT 1.1 %

Jupyter Notebook
1.1 %

CSS
1.1 %

Ruby
1.1 %

Scala
1.1 %
Location 🇩🇰 Denmark
Country Total Rank 224
Country Ranking

FreeMarker 1

HiveQL 1

Java
6

SCSS 7

XSLT 7

Dockerfile
12

Scala
56

HTML
74

CSS
94

R
100

Python
146

PHP
183

JavaScript
199

Shell
256

Ruby
277

TypeScript
310

Jupyter Notebook
486

ipt

GBIF Integrated Publishing Toolkit (IPT)

pygbif

GBIF Python client

maps

GBIF mapping service built on HBase and ElasticSearch, supporting Mapbox Vector Tiles and PNGs

pipelines

Pipelines for data processing (GBIF and LivingAtlases)

registry

checklistbank

GBIF Checklist Bank

portal16

GBIF.org website

portal-feedback

User feedback for the GBIF API, website and published data. You can ask questions here. 🗨❓

gbif-api

occurrence

Occurrence store, download, search

name-parser

The core GBIF scientific name parser library

data-mobilization

For capturing and discussing potential datasets suitable for publishing to GBIF

rs.gbif.org

GBIF machine-readable resources

hosted-portals

Support material for establishing the GBIF Hosted Portals

common-mybatis

Utilities for common MyBatis 3 persistence layers

gbif-npt-startup

This project is no longer maintained - code remains for reference only

gbif-data-validator

Home of the GBIF's data validator

dwca-io

Darwin Core Archive IO

docker-ipt

Docker image for the GBIF IPT

ppt-template

GBIF PowerPoint template repository

analytics

The analytics scripts used to calculate and generate all time series (etc.) graphs

gbif-web

jekyll-hp-base-theme

model-material

Data model research focused on richer data for a material catalogue

dwc-api

Darwin Core term enumeration

course-data-mobilization

GBIF Biodiversity Data Mobilization Course

hp-colombian-biodiversity

registry-console

parsers

Various GBIF parsers for dates, countries, language, taxon ranks, etc

vocabulary

A simple registry of controlled vocabularies used for terms found in GBIF mediated data.

hadoop-compress

ZIP compression support for Hadoop

crawler

The crawling pieces - ws, cli, coordinator

geocode

Geocode webservice and client

spark-duplicate-detection

A first attempt at using spark to find duplicates within the occurrence records

occurrence-cube

Workflows for producing species occurrence cubes from GBIF mediated data

text-tree

A simple taxonomic tree format using indented plain text

common-search

Common solr search code

key-value-store

Generic key-value store/cache

embl-adapter

Contains adapters for connecting EMBL content into GBIF

course-data-use

https://docs.gbif.org/course-data-use

algae

Algae classification

doc-georeferencing-best-practices

This publication provides guidelines to the best practice for georeferencing. Though it is targeted specifically at biological occurrence data, the concepts and methods presented here can be applied in other disciplines where spatial interpretation of location is of interest.

collection-mobilization

This repository is used to coordinate data mobilisation based on GRSciColl (https://www.gbif.org/grscicoll) entries.

stackable

GBIF Stackable Infrastructure

hp-ecuador

Ecuadorian Hosted Portal

dwca-validator3

edna-tool-ui

Frontend for the eDNA tool

gbif-doi

This project provides DOI services used by the IPT and Portal.

doc-publishing-dna-derived-data

This guide shows how to publish DNA-derived spatiotemporal biodiversity data and make it discoverable through national and global biodiversity data discovery platforms. Based on experiences from Australia, Norway, Sweden, UNITE, and GBIF.

model-tests

Exploration of sample models

iczn-lists

Darwin Core Archive of the Official Lists and Indexes of Names in Zoology

watchdog

Project functioning as a watchful guardian of content in the GBIF network, especially against datasets going offline.

datacite-rest-client

metrics

GBIF cube metrics and map

course-dna-barcoding

Biodiversity data management course: Accelerating biodiversity research through DNA barcodes, collection and observation data

course-introduction-to-gbif

Introduction to GBIF course

hp-land

hp-legume

Hosted portal for the Legume Phylogeny working group. Staging version: https://legume.hp.gbif-staging.org

doc-effective-nodes-guidance

Repo for prototype documentation used to establish an integrated workflow to produce, maintain and publish GBIF documentation

phylonext-ws

species-population

Map based visualisations of changes to species population

portal-web

Java struts2 webportal

hp-north-america

doc-openrefine-guide

Guía de Uso Básico de OpenRefine para la limpieza de datos sobre biodiversidad

hp-uk-collections

Source for the DiSSCoUK Data Portal provided by GBIF Hosted Portals

hp-grscicoll

model-interactions

A repository to capture exploratory work for interaction data

ssg-biodiversityinformatics

Website for GBIC2 event

hp-sibuy

hp-arctic-university-museum-norway

occurrence-heatmap

hp-sanbi

ssg-gb23

23rd governing board meeting

data-repo

doc-advancing-ipt-biocase-toolkits

gridded-datasets

pipelines-workshop

hp-vtatlasoflife

hp-us-collections

doc-georeferencing-quick-reference-guide

This is a practical guide for georeferencing and citable georeferencing protocol.

hp-living-norway

Living Norway Ecological Data Network is facilitating FAIR management of ecological data to the benefit of society and science; https://livingnorway.no/

hp-new-zealand

Hosted portal for GBIF New Zealand

postal-service

hp-solanaceae

Solanaceae Source - a global resource for the taxonomy of the nightshade family

hp-antarctic

Staging https://hp-antarctic.gbif-staging.org/

gbif-predicates

Predicates serialization format first used in the GBIF download API, extended for wider use with multiple backend implementations

hp-sprep

backbone-archive

GBIF Backbone Release Archive

machine-vision

Scripts and tutorials for extracting and using GBIF mediated images for MV

stackable-spark

Library to interact and submit Stackable Spark Applications

ssg

A static site generator for GBIF sub sites.

apiv1-graphql

bicikl-org-viz

gbif-common

Utility classes

hp-nhm-rotterdam

labs-phylogeny

course-checklistbank-tutorial

https://docs.gbif.org/course-checklistbank-tutorial

gbif-drupal

The GBIF.org drupal site

content-crawler

Crawls CMS and articles from Mendeley into ElasticSearch indexes

data-products

Data Products team

Jupyter Notebook