Explore @fulcrumgenomics Open Source projects

Fulcrum Genomics (@fulcrumgenomics)

fulcrumgenomics

Stars
715
Global Org. Rank 19,145 (Top 7 %)
Registered over 9 years ago
Most used languages

Rust
34.8 %

Scala
30.4 %

Python
21.7 %

Groovy
4.3 %

Java
4.3 %

R
4.3 %
Location 🇺🇸 United States
Country Total Rank 14,252
Country Ranking

Scala
105

Groovy
523

Rust
748

R
6,617

Python
9,993

fgbio

Tools for working with genomic and high throughput sequencing data.

fqgrep

Grep for FASTQ files

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

fqtk

Fast FASTQ sample demultiplexing in Rust.

fgpyo

Quality of life improvements for Bioinformatics in Python.

guide-counter

A better, faster way to count guides in CRISPR screens.

python-snakemake-template

A template repository for Snakemake pipepline(s) and a python command-line toolkit.

fgsv

Tools to gather evidence for structural variation via breakpoint detection.

pybedlite

Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)

sopt

An argument parsing library for Scala

pyfgaws

Python tools and APIs for working with AWS

stitch

Stitch is a toolkit for analysis of chimeric reads in sequencing data

prymer

Python Primer Design Library

nf-dotenv

Automatically source dotenv files into your Nextflow scope

setup-latch

commons

Common scala utilities

pooled-writer

A pooled writer and compressor library in Rust.

fgoxide

Quality of life improvements in Rust.

read-structure

read structures in rust

fgstr

Simple Tandem Repeat Genotyping for Duplex Sequencing

bgzf

rd4

.github

JeanLuc

fg-idprimer

Command-line Tools to Identify Primers in high throughput sequencing data