Computational Biology Research Group at Comenius University in Bratislava (@fmfi-compbio)
Guthub

fmfi-compbio

Twitter logo Share LinkedIn logo Share Facebook logo Share
  • Stars
    star
    132
  • Global Org. Rank 50,414 (Top 17 %)
  • Registered over 6 years ago
  • Most used languages
    Python
         53.3 %
    Jupyter Notebook
         20.0 %
    C
         6.7 %
    C++
         6.7 %
    Rust
         6.7 %
    HTML
         6.7 %

Top repositories

1

deepnano-blitz

Very fast ONT basecaller
Rust
52
star
2

osprey

Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.
C++
15
star
3

admm-pruning

Python
15
star
4

coral-basecaller

Python
13
star
5

warpstr

Determining tandem repeat lengths using raw nanopore signals.
Python
11
star
6

heron

HAC nanopore basecaller
Python
6
star
7

neural-network-merging

Jupyter Notebook
6
star
8

virpool

Tool for Model-Based Estimation of SARS-CoV-2 Variant Proportions in Wastewater Samples
Python
4
star
9

mc-overlaps

Python
3
star
10

trackDb

Local genome browser trackDb
HTML
1
star
11

pfp_wg

C
1
star
12

gemm_bench

Jupyter Notebook
1
star
13

mcdp2

Tool for colocalization analysis for genomic annotations with genomic contexts
Python
1
star
14

fast5-cleaner

Cleans analyses from fast5 files
Python
1
star
15

pridav_tutorials

Jupyter Notebook
1
star