@faircloth-lab
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faircloth-lab

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  • Stars
    star
    175
  • Global Org. Rank 43,328 (Top 14 %)
  • Registered almost 13 years ago
  • Most used languages
    Python
         78.9 %
    Forth     5.3 %
    Shell
         5.3 %
    Ruby
         5.3 %
    C
         5.3 %
  • Location 🇺🇸 United States
  • Country Total Rank 31,692
  • Country Ranking
    Forth     63
    Python
         6,244

Top repositories

1

phyluce

software for UCE (and general) phylogenomics
Python
76
star
2

illumiprocessor

pre-process illumina reads
Python
18
star
3

edittag

edit distance sequence tags and helpers
Python
12
star
4

protocols

Our laboratory repository
Python
11
star
5

seqtools

Tools for sequence and alignment manipulation
Python
9
star
6

splitaake

demultiplex massively parallel sequencing data
Python
8
star
7

bird-db

the application and database underlying birds.faircloth-lab.org
Python
6
star
8

tapir

Tally Approximations of Phylogenetic Informativeness Rapidly (TAPIR)
Python
6
star
9

conda-recipes

bioinformatics program recipes for the conda package manager
Python
4
star
10

demuxipy

Locate, error-correct, trim, and organize (hierarchically) sequence-tagged next-generation DNA reads
Python
4
star
11

uce-probe-sets

Repository of different outgroup databases for use building UCE trees
4
star
12

itero

A strongly opinionated, iterative, guided contig assembly pipeline. Integrates (+error-correction), bwa-mem, bedtools, and samtools. MPI and multiprocessing aware.
Python
3
star
13

uce-probe-design

Code for designing UCE probes
Python
2
star
14

mod-primer3

modified primer3 version that tracks primer3.sourceforge.net trunk
Forth
2
star
15

colony2-helpers

code to help run colony2
1
star
16

mp-est

modified version of mpest with CLI parameters
C
1
star
17

data-theme

Ruby
1
star
18

msatcommander-gs

A grown-up version of msatcommander for genome-scale data
Python
1
star
19

pd-ht

1
star
20

dimensions

Code associated with our NSF Dimensions of Biodiversity grant
1
star
21

radcap

Software for processing data from RADcap
Python
1
star
22

cookiecutter-supermike-examl

Shell
1
star
23

2011-fairclothetal-systbiol-uce

[Unsupported] Code used in Faircloth et al. Ultraconserved Elements Anchor Genetics Markers
Python
1
star