Explore @evolbioinfo Open Source projects

Evolutionary Bioinformatics (Institut pasteur) (@evolbioinfo)

evolbioinfo

Stars
283
Global Org. Rank 33,409 (Top 11 %)
Registered almost 8 years ago
Most used languages

Python
35.7 %

Go
21.4 %

Nextflow 14.3 %

C
7.1 %

Dockerfile
7.1 %

CSS
7.1 %

HTML
7.1 %
Location 🇫🇷 France
Country Total Rank 2,854
Country Ranking

Nextflow 7

Go
137

Dockerfile
209

C
678

Python
1,326

CSS
2,604

HTML
2,635

gotree

Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

goalign

Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

pastml

Ancestral character reconstruction and visualisation for rooted phylogenetic trees

booster

phylodeep

PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

dockerfiles

Dockerfiles for tools commonly used for phylogenetic analyses

phylocovid

bdei

Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

treesimulator

cytopast

cytopast is a python3 module that creates zoomable HTML visualisation of phylogenetic trees with annotated nodes

booster-workflows

pastmlweb

Web-app for PastML

booster-web

bayesian_bootstrap_analyses