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ETE Toolkit (@etetoolkit)

etetoolkit

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Registered almost 9 years ago
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Python
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ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

cookbook

course

Jupyter Notebook

treematcher

Search flexible patterns within tree structures using regular expression like syntax.

pmodeltest

Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

webplugin

Experiments for a new webplugin module (examples for phylotastic.org project )

ext_apps

A compilation of external software used by ETE