dynverse: benchmarking, constructing and interpreting single-cell trajectories (@dynverse)
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dynverse

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  • Stars
    star
    815
  • Global Org. Rank 17,634 (Top 6 %)
  • Registered about 7 years ago
  • Most used languages
    R
         80.0 %
    Python
         8.0 %
    TeX
         4.0 %
    HTML
         4.0 %
    Shell
         4.0 %

Top repositories

1

dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇
R
191
star
2

dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
R
166
star
3

dynmethods

A collection of 50+ trajectory inference methods within a common interface 📥📤
R
118
star
4

dynverse

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
R
72
star
5

dyngen

Simulating single-cell data using gene regulatory networks 📠
HTML
69
star
6

anndata

Annotated multivariate observation data in R
R
41
star
7

dynplot

Visualising single-cell trajectories, including comparisons between two models 📈
R
30
star
8

funkyheatmap

Visualising data frames as funky heatmaps 📊
R
24
star
9

babelwhale

Talking to Docker and Singularity containers
R
24
star
10

dynguidelines

Selecting the optimal trajectory inference based on a given dataset and user input 🔮
R
17
star
11

dynwrap

A common data format and inference environment for single-cell trajectories 📦
R
14
star
12

dyntoy

Toy synthetic data for testing and prototyping trajectory inference methods 🎲
R
8
star
13

dyndimred

Dimred methods for TI
R
7
star
14

lmds

Landmark Multi-Dimensional Scaling
R
7
star
15

dynbenchmark_results

Contains the results from the dynbenchmark evaluation, see https://github.com/dynverse/dynbenchmark
6
star
16

dyngen_manuscript

TeX
5
star
17

dyneval

Metrics to compare two or more trajectories ⚖
R
2
star
18

dynutils

Common Functionality for the 'dynverse' Packages
R
2
star
19

dynparam

R
2
star
20

competition

Topcoder single-cell trajectory inference competition
R
2
star
21

travis_scripts

Helper scripts for testing containers on Travis
Shell
2
star
22

dyncli

CLI helper package for creating TI containers
R
1
star
23

ti_paga

Python
1
star
24

funky_cover

Python
1
star
25

ti_monocle_ica

R
1
star
26

ti_scorpius

R
1
star