Dekker Lab (@dekkerlab)
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Top repositories

1

cworld-dekker

perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
Perl
63
star
2

crane-nature-2015

code associated with crane-nature-2015, 10.1038/nature14450
Perl
34
star
3

matrix_paper

Scripts and notebooks used in Akgol Oksuz et al. paper
Jupyter Notebook
11
star
4

cLIMS-docker

cLIMS repository running on Docker Contaienrs
Python
3
star
5

ALV-repo

Scripts and notebooks for ALV's publication
Jupyter Notebook
2
star
6

MC-3C_scripts

Scripts used to process and analyse the data in the MC-3C paper
R
2
star
7

giorgetti-nature-2016

code associated with giorgetti-nature-2016, /nature
2
star
8

Docker-Machines

Docker Files and docker-compose files for various machines
Shell
2
star
9

matrix_shared

collection of scripts, config files and other materials related to the Matrix project
Jupyter Notebook
2
star
10

cLIMS

Python
1
star
11

Zagelbaum_etal_NSMB_2022

Notebooks for Hi-C analyses related to "Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization".
Jupyter Notebook
1
star
12

chimera-tie-public

a split-read alignment process for mapping multi-chimeric reads
Python
1
star
13

Abramo_2019

some scripts and notebooks for the Abramo et al 2019 paper
Jupyter Notebook
1
star