CTMR (@ctmrbio)
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ctmrbio

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  • Stars
    star
    78
  • Global Org. Rank 64,810 (Top 21 %)
  • Registered about 8 years ago
  • Most used languages
    Python
         83.3 %
    Nextflow     8.3 %
    Groovy
         8.3 %
  • Location ๐Ÿ‡ธ๐Ÿ‡ช Sweden
  • Country Total Rank 2,385
  • Country Ranking
    Nextflow     14
    Groovy
         16
    Python
         527

Top repositories

1

stag-mwc

StaG Metagenomic Workflow Collaboration
Python
26
star
2

BACTpipe

BACTpipe: An assembly and annotation pipeline for bacterial genomics
Groovy
20
star
3

bioinformatics_curriculum

Some ideas on things to learn to get started with bioinformatics
17
star
4

valody

A tool to assign VAginaL DYnamic categories to individuals based on their Valencia CST assignments
Python
2
star
5

claritylims

Customizations for our GenoLogics BaseSpace Clarity LIMS
Python
2
star
6

print_ctmr_labels

Print CTMR labels on Zebra printer
Python
2
star
7

slurm-jobstats

Compute job statistics for Slurm jobs
Python
2
star
8

mgi-ncov19-snakemake

Python
1
star
9

list_scanner

List scanning application
Python
1
star
10

optivag

Database for annotating vaginal communities
Python
1
star
11

BVAB-and-Lac-sequences

The database contains a collection of sequences for BVAB (Bacterial vaginosis associated bacteria) and common vaginal Lactobacillus species.
1
star
12

sourmash_sketch

Compare samples based on kmers using Sourmash sketch
Nextflow
1
star
13

sm3

Simple Snakemake example
Python
1
star
14

Amplicon_workflows

Workflows and scripts for amplicon sequencing processing
Python
1
star
15

ML_swemami

Machine learning code used for SweMaMi study on miscarriage
1
star