CRUK Cambridge Institute - Bioinformatics Core (@crukci-bioinformatics)
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crukci-bioinformatics

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  • Stars
    star
    62
  • Global Org. Rank 72,202 (Top 23 %)
  • Registered about 11 years ago
  • Most used languages
    R
         50.0 %
    Java
         21.4 %
    Python
         7.1 %
    Rust
         7.1 %
    Makefile     7.1 %
    Nextflow     7.1 %
  • Location πŸ‡¬πŸ‡§ United Kingdom
  • Country Total Rank 12,486
  • Country Ranking
    Nextflow     51
    R
         294
    Makefile     824
    Java
         987
    Rust
         1,222

Top repositories

1

MGA

The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.
Java
25
star
2

rascal

R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.
R
10
star
3

clarityclient

A Java client for working with Genologics' REST API.
Java
5
star
4

PlateLayout

Plate randomistation using R
R
4
star
5

mga2

Multi-genome alignment contaminant screen for high-throughput sequence data
Rust
3
star
6

ampliconseq

Variant calling pipeline for amplicon sequencing data
R
3
star
7

gatk-tools

Utilities for processing sequencing data and genomic variants using GATK
Java
2
star
8

camcAPP

shiny app to explore various prostate cancer datasets
R
2
star
9

redpanda

R package to perform various analysis tasks on public microarray datasets that we have collected
R
1
star
10

docker-G4Hunter

1
star
11

qPLEXanalyzer

qPLEXanalyzer: Tools for qPLEX-RIME data analysis
R
1
star
12

shiny-base

Base Docker image for Shiny applications
Makefile
1
star
13

multiqc_mga2_plugin

MultiQC Plugin for MGA 2
Python
1
star
14

BCaPE

R/Shiny app for Breast Cancer PDTX Encyclopaedia
R
1
star
15

nf-alignment

Nextflow based alignment pipeline
Nextflow
1
star