@cov-lineages
Guthub

cov-lineages

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  • Stars
    star
    1,714
  • Global Org. Rank 10,625 (Top 4 %)
  • Registered over 4 years ago
  • Most used languages
    Python
         64.3 %
    PureBasic     14.3 %
    CSS
         7.1 %
    HTML
         7.1 %
    Jupyter Notebook
         7.1 %

Top repositories

1

pango-designation

Repository for suggesting new lineages that should be added to the current scheme
Jupyter Notebook
1,042
star
2

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.
Python
427
star
3

pangoLEARN

Store of the trained model for pangolin to access.
PureBasic
55
star
4

constellations

Python
43
star
5

scorpio

serious constellations of reoccurring phylogenetically-independent origin
Python
38
star
6

lineages

Resources for calling and describing the circulating lineages of SARS-CoV-2
Python
37
star
7

pangolin-data

Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
PureBasic
27
star
8

llama

Local Lineage and Monophyly Assessment
Python
16
star
9

lineages-website

HTML
16
star
10

pangolin-assignment

The latest lineage assignments from pangolin.
Python
8
star
11

lineages-website-old

CSS
7
star
12

grinch

global report investigating novel coronavirus haplotypes
Python
6
star
13

hedgehog

Spikey SARS-CoV-2 sequence based lineage set assignment
Python
4
star
14

pangoLEARN-training

pipeline for training pangoLEARN model
Python
3
star