@connor-lab
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connor-lab

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  • Stars
    star
    128
  • Global Org. Rank 51,216 (Top 17 %)
  • Registered over 6 years ago
  • Most used languages
    Python
         35.3 %
    Nextflow     29.4 %
    Shell
         23.5 %
    HTML
         5.9 %
    Perl
         5.9 %

Top repositories

1

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Nextflow
89
star
2

aln2type

Python
8
star
3

vapor

Python
6
star
4

singularity-recipes

A collection of Singularity recipes useful for our nextflow pipelines
Perl
5
star
5

nextflow_pipelines

Nextflow pipeline script, config and ancillary files for PHW PenGU sequencing
Nextflow
3
star
6

qc_nextflow

A nextflow pipeline for inital QC of Illumina sequencing data
Nextflow
3
star
7

vapor_benchmark_realdata

Shell
1
star
8

vapor_benchmark_simulation

HTML
1
star
9

PenGU-testdata-build

Simulate fastq files from a list of RefSeq URLs
Nextflow
1
star
10

pengu-ddt

A tool for interacting with the DIGEST project PostgreSQL database
Python
1
star
11

vapor_benchmark_reassortment

Shell
1
star
12

enterovirus-NF

Nextflow pipeline for de novo assembly of enterovirus genomes
Shell
1
star
13

prepareref_nextflow

Mask recombination from reference sequences for SNP calling
Nextflow
1
star
14

vapor_benchmark_mapping

Shell
1
star
15

centrifuge-summary

Summarise a Centrifuge (https://ccb.jhu.edu/software/centrifuge/manual.shtml) report for a specific taxon and its sub-taxa
Python
1
star
16

report-writer

Python
1
star
17

msa2vcf

Python
1
star