Section of Computational Biomedicine (@compbiomed)
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compbiomed

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  • Stars
    star
    246
  • Global Org. Rank 36,132 (Top 12 %)
  • Registered over 8 years ago
  • Most used languages
    R
         76.9 %
    Shell
         15.4 %
    Nextflow     7.7 %
  • Location 🇺🇸 United States
  • Country Total Rank 22,070
  • Country Ranking
    Nextflow     34
    R
         175

Top repositories

1

singleCellTK

Interactively analyze single cell genomic data
R
174
star
2

celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
R
48
star
3

animalcules

R shiny app for interactive microbiome analysis
R
45
star
4

enrichR

A hacky little interface to call the Enrichr functional enrichment tool from R.
R
12
star
5

MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
R
10
star
6

TBSignatureProfiler

Profile RNA-seq data using published TB gene signatures
R
10
star
7

RNA_Seq

Nextflow pipeline for preprocessing RNA sequencing data.
Nextflow
5
star
8

BatchQC

Batch Effects Quality Control Software
R
2
star
9

ASSIGN

Adaptive Signature Selection and InteGratioN
R
2
star
10

animalcules-docs

1
star
11

basespace-cli-scripts

Bash wrapper scripts for working with the BaseSpace command-line interface (CLI)
Shell
1
star
12

genome-reference-scripts

Scripts for creating genome references (FASTA, STAR, etc.)
Shell
1
star
13

beatmap

This heatmap *beats* the one you're using by adding comfortably spaced color bars and a color key.
1
star
14

scruff

Single Cell RNA-seq UMI Filtering Facilitator
R
1
star
15

curatedTBData

Curation of existing TB gene expression datasets
R
1
star