@cole-trapnell-lab
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cole-trapnell-lab

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  • Stars
    star
    1,244
  • Global Org. Rank 13,270 (Top 5 %)
  • Registered over 10 years ago
  • Most used languages
    R
         69.6 %
    C++
         13.0 %
    Jupyter Notebook
         8.7 %
    C
         4.3 %
    HTML
         4.3 %

Top repositories

1

monocle3

R
333
star
2

cufflinks

C++
311
star
3

monocle-release

R
277
star
4

garnett

Automated cell type classification
R
104
star
5

cicero-release

R
56
star
6

sci-plex

repository containing analysis scripts and auxiliary files
R
29
star
7

monocle2-rge-paper

Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
Jupyter Notebook
27
star
8

Scribe

Regulatory networks with Direct Information
C++
16
star
9

cole-trapnell-lab.github.io

HTML
13
star
10

leidenbase

C
13
star
11

worm-rna

The C. elegans transcriptome at single cell resolution
Jupyter Notebook
11
star
12

pseudospace

R
11
star
13

cicero

R
11
star
14

yeast_umap

Using UMAP on gene expression data from single-gene deletion strains of yeast to identify gene interactions
R
8
star
15

scRNASeqSim

A simulator for measuring developmental trajectories with single-cell RNA-seq
R
5
star
16

hooke

A package for comparing cell type abundances between conditions
R
5
star
17

DDRTree

An R implementation of the DDRTree algorithm for learning principal graphs
C++
4
star
18

HSMMSingleCell

R
3
star
19

sci-Plex-GxE

Repository of analysis code for sci-Plex-GxE analysis
R
2
star
20

sci-Space

Contains all the code used in the analysis of the sci-Space paper
R
2
star
21

monocle

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/monocle.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=monocle.
R
2
star
22

sdg-zfish

R
1
star
23

rccm

A modified cross-convergence mapping library
R
1
star