Explore @ccmbioinfo Open Source projects

Centre for Computational Medicine at SickKids (@ccmbioinfo)

ccmbioinfo

Stars
60
Global Org. Rank 73,271 (Top 24 %)
Registered over 8 years ago
Most used languages

Python
50.0 %

TypeScript
21.4 %

Shell
14.3 %

JavaScript
7.1 %

Perl
7.1 %
Location 🇨🇦 Canada
Country Total Rank 8,057
Country Ranking

Perl
337

TypeScript
1,078

Shell
1,271

Python
2,004

JavaScript
8,538

crg2

Research pipeline for exploring clinically relevant genomic variants

MetaFusion

stager

Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.

osmp

One-Sided Matching Portal

mugqic_pipelines

dcc-file-transfer

Server and client for transferring large files to the CCM's Data Coordination Centre (DCC)

cre

excel report generation using data from bcbio variant2 germline pipeline

FORCAST

Finding, Optimizing, and Reporting Cas Targets: a fully-integrated and open-source pipeline to design CRISPR mutagenesis experiments.

dti-processing

Steps and scripts involved with processing DTI images!

osmp-cmh-token-proxy

A NodeJS proxy for swapping Authorization headers in OSMP requests to CMH's PhenoTips instance.

showjobs

showjobs script for the HPF

report-scripts

Scripts to transform and POST pipeline reports

slurm-rest-py

OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.

MetaFusion-Clinical