Cancer Systems Immunology Lab (@carmonalab)
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carmonalab

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  • Stars
    star
    641
  • Global Org. Rank 20,515 (Top 7 %)
  • Registered over 5 years ago
  • Most used languages
    R
         81.3 %
    Dockerfile
         6.3 %
    Python
         6.3 %
    CSS
         6.3 %
  • Location ๐Ÿ‡จ๐Ÿ‡ญ Switzerland
  • Country Total Rank 802
  • Country Ranking
    R
         7
    Dockerfile
         239
    CSS
         299
    Python
         3,053

Top repositories

1

ProjecTILs

Interpretation of cell states using reference single-cell maps
R
234
star
2

UCell

Gene set scoring for single-cell data
R
126
star
3

scGate

marker-based purification of cell types from single-cell RNA-seq datasets
R
87
star
4

STACAS

R package for semi-supervised single-cell data integration
R
71
star
5

GeneNMF

Methods to discover gene programs on single-cell data
R
53
star
6

SignatuR

A database of useful gene signatures for single-cell analysis
R
20
star
7

ProjecTILs_CaseStudies

A repository of case studies using ProjecTILs
R
12
star
8

TILPRED

Tumor-Infiltrating CD8 Lymphocytes states prediction
R
12
star
9

scGate.demo

CSS
3
star
10

scGate_models

Cell type gating models for scGate
3
star
11

CD8_human_TIL_atlas_construction

Python
3
star
12

HiTME

High-resolution Tumor Micro-Environment cell type classification and compositional analysis for scRNA-seq
R
3
star
13

Tcell_clonal_analysis

Reproducible code for reference-based T cell clonal analysis
2
star
14

human_CD8_TIL_CaseStudies

Projection example using a human CD8 TIL reference map.
R
2
star
15

LiTang_IL10_CART

2
star
16

iSEE_Shiny_CD8TIL_2019

R
1
star
17

scGate.benchmark

Dockerfile
1
star
18

UCell_demo

R
1
star
19

scooter

R
1
star
20

Yerly_BCC_wounding

Code to reproduce the results by Yerly et al. (2024)
1
star