Explore @caravagnalab Open Source projects

The Cancer Data Science Laboratory at the University of Trieste (PI Giulio Caravagna) (@caravagnalab)

caravagnalab

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Location 🇮🇹 Italy
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revolver

REVOLVER - Repeated Evolution in Cancer

mobster

Model-based subclonal deconvolution from bulk sequencing.

CNAqc

CNAqc - Copy Number Alteration (CNA) Quality Check package

ctree

Clone trees for Cancer Evolution studies from bulk sequencing data.

CONGASp

TINC

Tumour-in-Normal Contamination assessment with evolutionary theory.

BMix

Binomial and Beta-Binomial mixture models for counts data.

nextflow_modules

Nextflow modules from the lab

rcongas_test

VIBER

VIBER - Variational Binomial Mixtures

easypar

Easy parallelisation of R computations.

simbasilica

generating and running synthetic data

pylineaGT

A Pyro model to perform lineage inference from Gene Therapy assays

INCOMMON

Inference of copy number and mutation multiplicity in oncology

caravagnalab.github.io

Landing repository for GitHub Pages

CONGASp_supplementary_data

Jupyter Notebook

lineaGT

Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations

basilica

Detecting mutational signatures via bayesian inference and a reference catalog