Cognitive and Affective Neuroscience Laboratory (@canlab)
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canlab

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Top repositories

1

CanlabCore

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
MATLAB
149
star
2

Neuroimaging_Pattern_Masks

Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
HTML
106
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3

MediationToolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
HTML
81
star
4

Lindquist_Dynamic_Correlation

Martin Lindquist's dynamic correlation toolboxes. Designed for fMRI analysis, useful for other applications too.
HTML
34
star
5

CANlab_help_examples

How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.
HTML
26
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6

Canlab_MKDA_MetaAnalysis

Coordinate-based meta-analysis for neuroimaging using Multilevel Kernel Density Analysis and various other statistical tools (chi-square, clustering, correspondence analysis, parcellation)
MATLAB
20
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7

RobustToolbox

Robust regression toolbox for neuroimaging data
HTML
14
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8

FMRI_simulations

HTML
9
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9

spm12

MATLAB
6
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10

CanlabScripts

A compilation of useful scripts commonly used in canlab
Jupyter Notebook
5
star
11

Paradigms_Public

Publicly available canlab experimental paradigms
JavaScript
5
star
12

preprocess

All of the preprocessing code
MATLAB
5
star
13

2017_kragel_mfc_generalizability_natneurosci

MATLAB code for identifying generalizable brain representations of pain, cognitive control, and negative emotion
MATLAB
4
star
14

WAViMedEEG

Jupyter Notebook
4
star
15

spm8

Version of SPM8 with the Canlab's internal modifications
MATLAB
3
star
16

cognitive_regulation_physiology

Data and scripts for Matthewson, Woo, & Wager (in prep)
HTML
3
star
17

cantainer

Containerizing the Canlab code
3
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18

2021_Ceko_MPA2_Aversive

MATLAB
3
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19

Attenuating_neural_threat_expression_with_imagination_2018

data to accompany neuron publication Attenuating neural threat expression with imagination (2018)
MATLAB
2
star
20

canlab_single_trials

A repository and data interface for MVPA education and model/algorithm development
MATLAB
2
star
21

canlab.github.io

HTML
2
star
22

WASABI_public

Public repository for the Warmth, Anticipation, Sensation, Aversion, and Body-part Imaging Study (WASABI)
Python
2
star
23

CANLab_PsychoPy_Toolbox

Ease of use PsychoPy Wrappers for efficient creation of CANLab stimulus paradigms in the fMRI scanner
Python
2
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24

2020_Visceral_and_Somatic_Pain

Code used in Van Oudenhove, Kragel, et al. 2020
MATLAB
1
star
25

pain_biotyping

MATLAB
1
star
26

ooFmriDataObjML

Object oriented ML framework for fmri_data objects
MATLAB
1
star
27

petre_scope_of_pain_representation

1
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28

2021_Koban_NRN_SelfInContext

MATLAB
1
star
29

ANiC.github.io

Affective Neuroimaging Collaboratory
MATLAB
1
star