Califano Lab (@califano-lab)
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califano-lab

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  • Stars
    star
    246
  • Global Org. Rank 36,132 (Top 12 %)
  • Registered over 7 years ago
  • Most used languages
    R
         72.7 %
    HTML
         9.1 %
    Cuda     9.1 %
    Java
         9.1 %

Top repositories

1

ARACNe-AP

Network Reverse Engineering through AP inference of Mutual Information
Java
81
star
2

PISCES

R package for Protein activity analysis of single-cell RNAseq.
R
74
star
3

single-cell-pipeline

HTML
40
star
4

OncoSig

Code to run OncoSig Analyses
R
18
star
5

NaRnEA

NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)
R
9
star
6

MOMA

R
6
star
7

GTEx-Networks

Tissue specific network for GTEx tissue data (TPM normalized).
5
star
8

ADVOCATE

ADVOCATE
R
3
star
9

tf_cotf_signalling_list

The list of TFs, coTFs, signalling, surfaceMarkers, etc for ARACNe
2
star
10

GPU-ARACNE

GPU-ARACNE
Cuda
2
star
11

CZI

CZI Project Results
R
1
star
12

vespa

VESPA (Virtual Enrichment-based Signaling Protein-activity Analysis) algorithm
R
1
star
13

NDP-KO-SC

Analysis code for collaboration with the Kuo lab. Single-cell analysis of NDP KO mice w/ and w/ out L6-F4-2 therapeutic agent.
R
1
star