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buschlab

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MTB-cbioportal

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

MIRACUM-Pipe-singularity

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

MtbImporter

Fully automated data import tool for cBioPortal (https://github.com/cbioportal/cbioportal). Best deployed with MTB-cBioPortal (https://github.com/buschlab/MTB-cbioportal) and MIRACUM-Pipe (https://github.com/AG-Boerries/MIRACUM-Pipe-docker).

MtbExporter

HowTos

Manuals and examples

Egyptref

Scripts and pipelines used in the generation of "An Egyptian Genome Reference"