Laboratory of Food Systems Biotechnology (@bokulich-lab)
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bokulich-lab

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Top repositories

1

RESCRIPt

REference Sequence annotation and CuRatIon Pipeline
Python
90
star
2

q2-fondue

Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
Python
20
star
3

q2-types-genomics

QIIME 2 types for genomics plugins.
Python
6
star
4

q2-assembly

QIIME 2 plugin for (meta)genome assembly.
Python
4
star
5

advanced-comp-bio-tutorial

Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
Jupyter Notebook
4
star
6

q2-plugin-template

A skeleton for QIIME 2 plugins
Python
3
star
7

q2-protein-pca

QIIME2 plugin for PCA analysis of protein sequence phylogeny.
Python
3
star
8

HPV-multiOmics

Multi-Omics Predictive Modelling of Cervicovaginal Microenvironment
Python
3
star
9

uzh-microbiome-tutorial

Jupyter Notebook
3
star
10

nf-ducken

Workflow to process amplicon meta-analysis data, from NCBI accession IDs to taxonomic diversity metrics.
Nextflow
3
star
11

q2-moshpit

MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
Python
3
star
12

db-benchmarks-2020

Database benchmarks using RESCRIPt
Jupyter Notebook
2
star
13

q2-pinocchio

Python
1
star
14

q2-fondue-examples

Materials accompanying q2-fondue article.
Jupyter Notebook
1
star
15

mishmash

Python
1
star
16

FermDB

1
star
17

q2-amr

Python
1
star