Biological and Medical Big data Mining Lab (@bm2-lab)
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bm2-lab

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Top repositories

1

DeepCRISPR

Python
58
star
2

PanPep

Python
44
star
3

pTuneos

pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
Python
34
star
4

scLearn

scLearn：Learning for single cell assignment
R
34
star
5

X-MOL

Python
31
star
6

scMVP

Python
28
star
7

MUSIC

model-based understanding of single-cell CRISPR screening
R
23
star
8

DeepReac

Python
15
star
9

neoFusion

Python
13
star
10

FL-QSAR

Python
12
star
11

MetaTopics

JavaScript
12
star
12

SpaDo

Multi-slice Spatial Transcriptome Domain Analysis.
R
8
star
13

CRISOT

Python
6
star
14

UniTCR

Python
6
star
15

DrSim

A general learning-based framework for drug annotation and repositioning based on transcriptional profile
Python
6
star
16

ASNEO

Python
5
star
17

comboSC

Personalized tumor combination therapy prediction based on single cell RNA-seq
R
5
star
18

STAMP

Jupyter Notebook
5
star
19

iGWOS

iGWOS: integrated Genome-Wide Off-target cleavage Search
Python
4
star
20

cage

CRISPR KO Analysis based on Genomic Editing data
Python
4
star
21

PREP

PREP: Prioritizing of RNA Editing-based Peptides
Python
4
star
22

PathoTME

Genomics-guided Representation Learning for Pathologic Pan-cancer Tumor Microenvironment Subtype Prediction (MICCAI 2024 oral)
Python
3
star
23

PerturBase

The most comprehensive database designed for the analysis and visualization of single cell perturbation data
Python
3
star
24

mtSC

A multitask deep metric learning-based framework for single cell assignment based on multiple references
Python
3
star
25

iDMer

Python
3
star
26

SCMMIB_pipeline

Jupyter Notebook
2
star
27

CausCell

Python
2
star
28

SCMMI_Benchmark

Python
2
star
29

MLClass

Program and Data for Machine Learning Class, School of Life Sciences and Technology, Tongji Univ.
Python
2
star
30

TCRBagger

TCRBagger
Python
2
star
31

scPrivacy

Python
2
star
32

SpaTME

R
1
star
33

comboSC-mut

R
1
star
34

BExplorer

Python
1
star
35

SpaAlign

Alignment of Spatial transcriptomics
R
1
star
36

CRISPR-off-target-data-imbalance

Jupyter Notebook
1
star