The Biopragmatics Lab (@biopragmatics)
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biopragmatics

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Top repositories

1

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.
Python
118
star
2

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
Python
61
star
3

biomappings

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
Jupyter Notebook
50
star
4

bioversions

🪝 What's the latest version for each database?
Python
26
star
5

curies

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python
Python
21
star
6

bioontologies

🏷️ Unified access to biomedical ontologies
Python
8
star
7

obo-db-ingest

🗄️ Conversion of biomedical nomenclatures like HGNC to OBO
Python
6
star
8

semra

🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings
Jupyter Notebook
6
star
9

oquat

🎬 Ontology Quality Assesment Toolkit
Python
5
star
10

curies.rs

🦀 Idiomatic conversion between URIs and compact URIs (CURIEs) in Rust
Rust
4
star
11

biolookup

🔍 The Biolookup Service retrieves metadata and ontological information about biomedical entities.
Python
3
star
12

biolexica

📘 Generate and apply coherent biomedical lexical indices for NER and NEN
Jupyter Notebook
2
star
13

debio

🥮 Decentralized Biomedical Ontology
Python
1
star