Nanoimaging at the IPHT Leibniz Institut Jena (@bionanoimaging)
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bionanoimaging

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Top repositories

1

FourierTools.jl

Tools for working with Fourier space.
Julia
52
star
2

Scalable-Angular-Spectrum-Method-SAS

Implementations of the Scalable Angular Spectrum Method
Jupyter Notebook
47
star
3

TiledViews.jl

Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.
Julia
12
star
4

Beamerscope_MATLAB

This is a repository for a 3D printed DIY microscope with a structured illumination using a LED video-projector and an Android Cellphone. This is the MATLAB Code to create a machine learning dataset from phasecontrast images and its corresponding optimized illumination sources.
MATLAB
7
star
5

Image-Processing-In-Microscopy-2021-2022

Course material for "Image Processing in Microscopy" at the Friedrich Schiller University in Jena in the winter term 2021/22
Julia
7
star
6

IndexFunArrays.jl

Fun with indices (and functions on them)
Julia
7
star
7

SeparableFunctions.jl

Calculates multidimensional functions faster by exploiting their separability.
Julia
6
star
8

Image-Processing-In-Microscopy-2022-2023

Julia
6
star
9

Introduction_Image_Processing_Julia

Material for 6th NORMIC Image Processing Workshop
5
star
10

cellSTORM-Tensorflow

Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: https://arxiv.org/abs/1804.06244
Python
5
star
11

NDTools.jl

A lightweight package for utility functions for working with multi-dimensional data
Julia
5
star
12

View5D

An image viewer for up to 5-dim data www.nanoimaging.de/View5D
Java
5
star
13

bionanoimaging.github.io

Repository for hosting the website files
SCSS
4
star
14

cellSTORM-ANDROID

Application to readout BW-frames from HUAWEI derived from Camera2RAW and FreedCAM
Java
3
star
15

PSFToolbox-Matlab

Includes various ways to calculate point spread functions (PSFs) with a focus on high NA fluorescence microscopy.
MATLAB
3
star
16

Beamerscope-ANDROID

Beamerscope-ANDROID
C++
2
star
17

cellSTORM-pyTorch

Code to train the image enhancement for the cellSTORM approach
Python
2
star
18

cellSTORM-MATLAB

Code to generate datasets for the cellSTORM approach
MATLAB
2
star
19

Tensorflow_MultipleScattering

Repo to compare different single/multiple scattering algorithms computationally.
Python
2
star
20

matlab_tools

MATLAB
2
star
21

cellSTORM_TENSORFLOW

This is the APP to localize dSTORM experiments using an Android cellphone and an image-to-image GAN
C++
2
star
22

PSFDistiller.jl

Distills a point spread function (PSF) from a measurement of beads by selecting local maxima that are separate enough from other ones.
Julia
2
star
23

cameracalibration

This is a Napari Plugin that calibrates your camera w.r.t. readnoise and gain
Python
1
star
24

Beamerscope_TENSORFLOW

This creates a Tensorflow Graph for the automaized illumination detection.
Python
1
star
25

Beamerscope_CAD

Learn to illuminate with an optimized light-source shape. This is the CAD Repository for the projector based cellphone microscope which is benefitting from the light source.
1
star
26

NanoImagingPack

Python pack for nanoimaging-related tasks
Python
1
star