Biomedical Informatics Group (@biomedicalinformaticsgroup)
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Top repositories

1

cadmus

A full-text article retrieval pipeline for biomedical literature.
Python
18
star
2

ParallelPyMetaMap

This code is to run MetaMap in parallel using Python.
Python
8
star
3

Sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.
Python
8
star
4

pm_abs_extr

This repository automatically requests and extracts abstract from PubMed.
Python
1
star
5

targetPredictor

project1
R
1
star
6

bionlp_resources

Repository where we can keep scripts related to other projects
Python
1
star
7

clusterCons

Merged consensus clustering to assess and improve class discovery with microarray data
R
1
star
8

MOGDx-PPMI

R
1
star
9

oa_pmc_extr

This repository automatically requests and extracts Full Text from Open Access PMC.
Python
1
star
10

networks_ismb24

Jupyter Book for the Networks Tutorial at ISMB2024, Montreal, Canada.
Jupyter Notebook
1
star