@biomed-AI
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biomed-AI

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Top repositories

1

MolRep

MolRep: A Deep Representation Learning Library for Molecular Property Prediction
Python
125
star
2

GraphSite

GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
Python
56
star
3

PROTAC-RL

Python
56
star
4

GraphPPIS

Python
49
star
5

SPROF-GO

Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion
Python
36
star
6

Hist2ST

Jupyter Notebook
32
star
7

DiffDec

Python
28
star
8

STAMP-DPI

Python
27
star
9

MUSE

Python
24
star
10

DRlinker

Python
21
star
11

LMetalSite

LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning
Python
18
star
12

GraphSCI

Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks
Jupyter Notebook
18
star
13

GraphEC

Python
17
star
14

GPSite

Geometry-aware protein binding site predictor
Python
16
star
15

GraphCS

Jupyter Notebook
14
star
16

nucleic-acid-binding

Python
12
star
17

CoSMIG

Communicative Subgraph Representation Learning for Multi-Relational Inductive Drug-Gene Interaction Prediction
Python
11
star
18

GraphBepi

Python
10
star
19

GraphSCC

single-cell RNA-seq clustering
Python
10
star
20

GraphEBM

Python
9
star
21

ConGI

Jupyter Notebook
9
star
22

PharmKG

Python
8
star
23

SANGO

The official implementation for "SANGO".
Jupyter Notebook
8
star
24

scAdapt

Python
8
star
25

TransEPI

Enhancer-promoter interaction model
Python
8
star
26

LMDisorder

Python
7
star
27

Meta-MO

Python
7
star
28

CellFM

Jupyter Notebook
7
star
29

ADClust

A parameter-free clustering method for single-cell data
Python
5
star
30

DeepMutSol

Python
4
star
31

DeepBayesianCox

Python
3
star
32

MTDsite

Predicting binding sites through multiple-task deep neural networks
2
star
33

CMPRY

Python
2
star
34

GP-nano

GP-nano: a geometric graph network for nanobody polyreactivity prediciton
Python
2
star
35

SCHAP

R
1
star
36

MSASC

A few codes of our method from method darn (github.com/junfengwen/DARN)
Python
1
star
37

MeHi-SCC

Hierarchical scRNA-seq clustering
Python
1
star
38

scFPN

Python
1
star
39

ML-GVP

The CAGI6-Sherloc model
Python
1
star
40

DrugVNN

Python
1
star
41

ProTact

Python
1
star
42

DeepEPI

Capturing large genomic contexts for accurately predicting enhancer-promoter interactions
Python
1
star