Explore @bioinformatics-ua Open Source projects

UA.PT Bioinformatics (@bioinformatics-ua)

bioinformatics-ua

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Location 🇵🇹 Portugal
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dicoogle

Dicoogle - Open Source PACS

GenericCDSS

GenericCDSS is a web-based application, which provides the main dashboard where professionals (e.g, practitioners, nurses) can follow all the patients that are under their responsibility and some details about the state of each one.

taska

Workflow Management for Biomedical exploration

DrAC

Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

COEUS

COEUS: Semantic Web Application Framework

dicoogle-learning-pack

Resources for users and developers of Dicoogle

BIcenter

A web-based platform that allows the building and management of ETL pipelines in a multi-institution environment.

gimli

Gimli is now part of Neji.

scaleus

Semantic Web Services Integration for Biomedical Applications

dicoogle-plugin-sample

Dicoogle Plugin - Sample

dicoogle-client-js

Dicoogle Client - Javascript

montra

Public release of Montra (previously called Catalogue). EMIF Catalogue is backed by Montra.

imageclef-toolkit

A toolkit for the research group's participations on the ImageCLEF challenges

biocreativeVII_track2

BioCreative VII NLM-Chem track: full-text chemical identification and indexing in PubMed articles

PatientTM

Patient trajectory modeling solution for clinical outcome prediction

CMToolkit

The Cohort Migration Toolkit

midas

MIDAS is a multi-framework DataLoader that can be leverage to produce highly efficient data pipelines

PatientFM

Patient Family History extraction tool

neji

Flexible, easy and powerfull framework for faster biomedical concept recognition.

polus

Diseasecard

Rare Diseases Portal using COEUS framework

BIcenter-AD

A web solution to harmonise different Alzheimer's Disease cohorts into a standard data schema, using ETL processes in a multi-institution environment.

trigner

Trigger recognition for event mining.

dicoogle-java

Dicoogle Webservices Wrapper for Java

EACL2021-reproducibility

GDI_Pipeline

A Pipeline for comparing GATK and Deepvariant

dicoogle-api

Dicoogle API website source code and generation scripts

COMPACT

Compressor Benchmark Taxonomic Classification

MicroGES

R solution to identify gene expression signatures in microarray datasets

dicoogle-python

Dicoogle Webservices Wrapper for Python

AchillesLite

Python tool to extract relevant information from Achilles to be used in the EHDEN Network Dashboards

mRNA-Optimiser

Console application to redesign mRNA nucleotide sequences (given as text strings) to enhance its secondary structure in terms of minimum free energy

SecureFASTA

Tool for encrypt and decrypt fasta files to be send in a insecure communication channel

PPSE

Posterior Playfair Searchable Encryption (PPSE)

ann2rdf

Semantic layer to convert multiple annotations files into RDF data

montra-client-python

Montra Webservices Wrapper for Python

Eugene

EuGene is a synthetic gene redesign software.

BioKBQA

BioKBQA - Biomedical Knowledge Base Question Answering

BioASQ

Deep architectures for biomedical question answering

i2x

jdicomanonymizer

Application to anonymize DICOM files. It can be used as a standalone application or library

BackupUploader

EnchyBASE

Enchytraeus Albidus Database

biodata-starter-kit-se-deployment-notes

Documentation of deployment of the GDI starter kit in Portuguese node

i2x-client

i2x client agent

WAVe

Web Analysis of the Variome

jquery-booleanquerywidget

It is a jquery plugin to build boolean queries in javascript

coeus-python

COEUS Python Client

dicoogle-mongo-plugin

Mongo DB Plugin for Dicoogle. It uses the MongoDB to File Storage and also for query.

TranSMART-migrator

A solution for migrating patients' information from the OMOP CDM database to TranSMART structure.

GeoDropdown.js

Geo Dropdown component for javascript

ArcadeBattle

Serious games for hand arthritis rehabilitation

scaleus-fair

scaleus-python

SCALEUS Python Client

dicoogle-couchdb-plugin

Dicoogle CouchDB Plugin

BioAnswer

PrivacyCDM

Privacy preserving techniques applied to OMOP CDM

KNOWLAM

PEI-detector-models

A list of models capable of detect computed-generated text from human