The Bioinformatics Repository (@bioinform)
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bioinform

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  • Stars
    star
    651
  • Global Org. Rank 20,306 (Top 7 %)
  • Registered over 10 years ago
  • Most used languages
    Python
         46.2 %
    C++
         23.1 %
    Java
         15.4 %
    Jupyter Notebook
         7.7 %
    R
         7.7 %

Top repositories

1

somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq
Python
193
star
2

neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
Python
168
star
3

rnacocktail

Jupyter Notebook
88
star
4

varsim

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
Java
79
star
5

metasv

MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
Python
54
star
6

breakseq2

BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
Python
24
star
7

ecTMB

R
19
star
8

IDP

IDP is a statistical isoform prediction method to construct possible isoform candidates from the union of long reads and short reads with spliced alignment
Python
7
star
9

LSC

LSC is a long read error correction tool. It offers fast correction with high sensitivity and good accuracy.
Python
6
star
10

longislnd

LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes
Java
4
star
11

swifr

C++
3
star
12

QBC_Single_Cell_Analysis_NGS

C++
2
star
13

huref-gs

1
star
14

Daedalus

C++
1
star