Explore @bioinfoUQAM Open Source projects

LaboBioInfoUQÀM (@bioinfoUQAM)

bioinfoUQAM

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Location 🇨🇦 Canada
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Canadian-cropland-dataset-github

This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.

CASTOR_KRFE

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

fungalbgcdata

TOUCAN

Supervised learning for fungal BGC discovery

RL-bgc-components

Reinforcement learning for improving components in fungal BGCs

mirLibSpark

microRNA validation using Spark framework

KEVOLVE

Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold

Jupyter Notebook

Caribou

Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning

tgowler

TGROWLeR system abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.

LAAMS

Supervised learning for Lactanet Automatic Milking Systems (AMS) data

Jupyter Notebook

WGS_Pipeline

Pipeline for analysis of DNA-seq on Compute Canada HPC servers.