Explore @bioimage-io Open Source projects

BioImage.IO (@bioimage-io)

bioimage-io

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Java
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Python
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bioimage.io

Website for the BioImage Model zoo -- a model zoo for bioimage analysis.

bioimageio-chatbot

Your Personal Assistant in Computational Bioimaging.

Jupyter Notebook

JDLL

The Java library to run Deep Learning models

core-bioimage-io-python

Python libraries for loading, running and packaging bioimage.io models

Jupyter Notebook

spec-bioimage-io

Specification for the bioimage.io model description file.

bioimage-io-resources

Model repository for bioimage.io

napari-bioimageio

bioengine

Jupyter Notebook

collection-bioimage-io

(deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO

AdvanceImageAnalysisEMBO2023

Workshop-June2024-Madrid

Repository for hosting all resources and details related to the AI4Life and BioImage Model Zoo workshop scheduled for June 2024 in Madrid.o

Jupyter Notebook

bioengine-model-runner

workflows-bioimage-io-python

BioImage.IO Workflow definitions and implementations. This library extends the functionality of the BioImage.IO Core library.

tensorflow-1-java-interface

bioimageio-monai

MONAI - BioImage Model Zoo specifications translation. The aim of this repo is to build a programmatic translation that takes MONAI models and converts them into a BioImage.IO compatible format.

tensorflow-2-java-interface

use-cases

Drafting the use-cases for the publication

bioimageio-colab

Collaborative image annotation and model training with human in the loop

Jupyter Notebook

core-bioimage-io-java

Java specific core utilities for interpretation of specification files of the bioimage model zoo

PredictorOp

pytorch-java-interface

onnx-java-interface

bioimageio-napari

A library for running bioimage.io models in napari

fiji-bioimage-io

tensorflow-2-java-interface-0.2.0

bioimageio-uploader

bioengine-web-client

Web Client for running models via the BioEngine