Biological Data Science Collaboratory (@bioDS)
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bioDS

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  • Stars
    star
    41
  • Global Org. Rank 87,165 (Top 28 %)
  • Registered about 6 years ago
  • Most used languages
    Python
         42.9 %
    C
         21.4 %
    R
         21.4 %
    Java
         7.1 %
    HTML
         7.1 %
  • Location πŸ‡³πŸ‡Ώ New Zealand
  • Country Total Rank 1,558
  • Country Ranking
    R
         32
    C
         154
    Java
         227
    Python
         452
    HTML
         942

Top repositories

1

phyloRNAanalysis

A phylogenetic analysis from scRNA-seq data using both expression levels and identified SNVs
R
7
star
2

phyloRNA

A package to facilitate a phylogenetic analysis of scRNAseq data
R
6
star
3

Pint

Fast interactions lasso for sparse data
C
6
star
4

beast-phylonco

A BEAST2 package for single-cell cancer evolution
Java
6
star
5

tetres

Package for discrete time trees
Python
3
star
6

treeOclock

Implementation of algorithms in the RNNI space, e.g. FINDPATH
C
3
star
7

vcf2fasta

Python
2
star
8

beter

R package to programatically create BEAST2 XMLs
R
2
star
9

snvformer

Python
2
star
10

beast-phylonco-paper

Data and analysis scripts to accompany BEAST phylonco
Python
1
star
11

lab

Biological Data Science Lab website
HTML
1
star
12

RNNI_code

Python
1
star
13

rrnni

R package for RNNI distance
C
1
star
14

rankedSPR

Code for the ranked SPR paper, mostly experiments on diameters and shortest paths
Python
1
star