Aristotle (@aristoteleo)
Guthub

aristoteleo

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
Python
411
star
2

spateo-release

Spatiotemporal modeling of spatial transcriptomics
Python
158
star
3

Scribe-py

Regulatory networks with Direct Information in python
Python
38
star
4

dynamo-tutorials

Tutorials on using latest dynamo package
Jupyter Notebook
23
star
5

dynast-release

Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
Python
15
star
6

spateo-viewer

Web application demonstrating 3D modeling of spatial transcriptomics
Python
11
star
7

spateo-tutorials

tutorials for spateo package
Jupyter Notebook
6
star
8

dynamo-notebooks

Tutorials of Dynamo usage cases and code to reproduce the manuscript
Jupyter Notebook
6
star
9

Scribe-Python-notebooks

Tutorials of Scribe Python package usage cases
Jupyter Notebook
3
star
10

stereo-seq-with-dynamo

notebooks that use dynamo to analyze the Stereo-seq datasets
Jupyter Notebook
3
star
11

CSP4ML

repo for modeling and analyzing metabolic labeling data
Jupyter Notebook
2
star
12

logging

Repository for dynamo style's logging functionalities
Python
1
star