AQ Laboratory (@aqlaboratory)
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Top repositories

1

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Python
2,722
star
2

proteinnet

Standardized data set for machine learning of protein structure
Python
851
star
3

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
Python
326
star
4

genie

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
Python
138
star
5

rgn2

Python
100
star
6

genie2

Protein structure diffusion model for unconditional protein generation and motif scaffolding
Python
91
star
7

hsm

Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
Jupyter Notebook
62
star
8

pnerf

Python
31
star
9

insilico_design_pipeline

In-silico design pipeline for evaluating protein structure diffusion models.
Python
12
star
10

sh2-cancer

MSM model of SH2-phosphoprotein cancer networks
Mathematica
9
star
11

hsm-web

Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
HTML
7
star
12

hth-dna-db

Database of HTH-DNA complexes
Mathematica
1
star